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McGenus: A Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
McGenus Monte Carlo algorithm RNA secondary structures pseudoknots
2012/4/28
We present McGenus, an algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. McGenus can treat...
The Expected Order of Saturated RNA Secondary Structures
Horton-Strahler number generating function Hankel contour Transfer Theorem singularity analysis
2011/9/9
Abstract: We show the expected order of RNA saturated secondary structures of size $n$ is $\log_4n(1+O(\frac{\log_2n}{n}))$, if we select the saturated secondary structure uniformly at random. Further...
TT2NE: A novel algorithm to predict RNA secondary structures with pseudoknots
algorithm predict RNA secondary structures
2010/11/15
We present TT2NE, a new algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. TT2NE guarantee...
RNA secondary structures, polygon dissections and clusters
RNA secondary structures polygon dissections clusters
2010/11/16
We show that the notion of induction introduced by Cassaigne, Ferenczi and Zamboni for trees of relations arising in the context of interval exchange relations can be generalised to the case of an arb...